Example output
Noramlly it takes about seconds for PS-HomPPI to process a pair of query protein chains. In rare cases, it can take about minutes. Results will be emailed to you. A KEY difference between v 1.3 and its previous versions: v 1.3 clusters the dimer templates and outputs predicted residue-residue distances from each cluster. This solves the problem of multiple binding modes. If after checking the templates identified from one run of PS-HomPPI, you want to exclude interfaces between some chains in the templates, you may submit a second run and use the deletion box. Here is an example output. --------------------------------------------------------------------------------------------
Thank you for using PSHOMPPI v1.3.
The prediction results for your job example is now available.Results
Predicted Ca-Ca distances for the interface residue pairs can be downloaded from here. The statistics of sequnece similarity of query and its homo-interologs can be downloaded here. Please note that not all the homo-interologs listed in this file was used by PSHOMPPIv1.3. The complete run can be downloaded as a gzipped tar file from here.User input Data
The fasta files of the query proteins is here. The query ID pair file is here. The delete file is here.Query Parameters
| Interface atom distance threshold | 5 Å |
| K in K-nearest homologs | 10 |